phenomix.core

Authors: Brian Schilder

README updated: Aug-03-2025

phenomix.core: Core phenomix functions.

Core functions for the phenomix R package.

Installation

if(!require("BiocManager")) install.packages("BiocManager")

BiocManager::install("neurogenomics/phenomix.core")
library(phenomix.core)

Documentation

Website

Getting started

---

Session Info

utils::sessionInfo()

## R version 4.4.2 (2024-10-31)
## Platform: aarch64-apple-darwin20
## Running under: macOS Sequoia 15.5
## 
## Matrix products: default
## BLAS:   /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libRblas.0.dylib 
## LAPACK: /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libRlapack.dylib;  LAPACK version 3.12.0
## 
## locale:
## [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
## 
## time zone: America/New_York
## tzcode source: internal
## 
## attached base packages:
## [1] stats     graphics  grDevices utils     datasets  methods   base     
## 
## loaded via a namespace (and not attached):
##  [1] gtable_0.3.6        jsonlite_2.0.0      renv_1.1.5         
##  [4] dplyr_1.1.4         compiler_4.4.2      BiocManager_1.30.26
##  [7] tidyselect_1.2.1    dichromat_2.0-0.1   rvcheck_0.2.1      
## [10] scales_1.4.0        yaml_2.3.10         fastmap_1.2.0      
## [13] here_1.0.1          ggplot2_3.5.2       R6_2.6.1           
## [16] generics_0.1.4      knitr_1.50          yulab.utils_0.2.0  
## [19] tibble_3.3.0        desc_1.4.3          dlstats_0.1.7      
## [22] rprojroot_2.1.0     pillar_1.11.0       RColorBrewer_1.1-3 
## [25] rlang_1.1.6         badger_0.2.5        xfun_0.52          
## [28] fs_1.6.6            cli_3.6.5           magrittr_2.0.3     
## [31] rworkflows_1.0.6    digest_0.6.37       grid_4.4.2         
## [34] rstudioapi_0.17.1   lifecycle_1.0.4     vctrs_0.6.5        
## [37] evaluate_1.0.4      glue_1.8.0          data.table_1.17.8  
## [40] farver_2.1.2        rmarkdown_2.29      tools_4.4.2        
## [43] pkgconfig_2.0.3     htmltools_0.5.8.1