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@ncezid-biome

NCEZID-EDLB

Bioinformatics projects spanning the Bioinformatics Research and Development (BiRD) and Culture Independent and Metagenomics Subtyping (CIMS) Teams in EDLB

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  1. datasets datasets Public

    Benchmark and toy datasets

    Perl 11 3

  2. pn2.0-mlst-databases pn2.0-mlst-databases Public

    Databases for wg/cgMLST analysis with the PN2.0 software

    10 2

  3. HMAS-QC-Pipeline2 HMAS-QC-Pipeline2 Public

    An analysis pipeline for initial quality control and denoising of highly-multiplexed amplicon sequencing (HMAS) data, now without using mothur (as was used in the previous version)

    HTML 8 3

  4. trapical trapical Public

    trapical: trapical rapidly aligns Pulsenet islolate core alleles

    Python 4 1

  5. bsProfile bsProfile Public

    Make a bootstrap MLST tree from your profiles

    Perl 4 1

  6. HMAS-QC-Pipeline HMAS-QC-Pipeline Public

    Forked from jessicarowell/HMAS-QC-Pipeline

    A pipeline for performing quality control on HMAS data, in preparation for downstream MLST-like or AMR-like analyses.

    Python 3 2

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