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Fix broken reference database links
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Amplicon/Illumina/Pipeline_GL-DPPD-7104_Versions/GL-DPPD-7104-B.md

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@@ -38,7 +38,7 @@ Amanda Saravia-Butler (GeneLab Data Processing Lead)
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<!-- Included R packages -->
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- Assay-specific suffixes were added where needed for GeneLab repo ("GLAmpSeq")
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- The ITS UNITE reference database used was updated to "UNITE_v2023_July2023.RData", from http://www2.decipher.codes/Classification/TrainingSets/
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- The ITS UNITE reference database used was updated to "UNITE_v2023_July2023.RData", from https://www2.decipher.codes/data/Downloads/TrainingSets/
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- Several program versions were updated (all versions listed in [Software used](#software-used) below)
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@@ -103,8 +103,8 @@ Amanda Saravia-Butler (GeneLab Data Processing Lead)
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|Program used| Database| Relevant Links|
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|:-----|:-----:|--------:|
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|DECIPHER| SILVA SSU r138 | [http://www2.decipher.codes/Classification/TrainingSets/SILVA_SSU_r138_2019.RData](http://www2.decipher.codes/Classification/TrainingSets/)|
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|DECIPHER| UNITE v2020 | [http://www2.decipher.codes/Classification/TrainingSets/UNITE_v2020_February2020.RData](http://www2.decipher.codes/Classification/TrainingSets/)|
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|DECIPHER| SILVA SSU r138 | [https://www2.decipher.codes/data/Downloads/TrainingSets/SILVA_SSU_r138_2019.RData](https://www2.decipher.codes/data/Downloads/TrainingSets/)|
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|DECIPHER| UNITE v2023 | [https://www2.decipher.codes/data/Downloads/TrainingSets/UNITE_v2023_July2023.RData](https://www2.decipher.codes/data/Downloads/TrainingSets/)|
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@@ -443,7 +443,7 @@ dna <- DNAStringSet(getSequences(seqtab.nochim))
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Downloading the reference R taxonomy object:
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```R
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download.file( url=http://www2.decipher.codes/Classification/TrainingSets/SILVA_SSU_r138_2019.RData”, destfile=SILVA_SSU_r138_2019.RData”)
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download.file( url=https://www2.decipher.codes/data/Downloads/TrainingSets/SILVA_SSU_r138_2019.RData”, destfile=SILVA_SSU_r138_2019.RData”)
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```
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**Parameter Definitions:**

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