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GeneLab_Reference_Annotations/Workflow_Documentation/GL_RefAnnotTable-A
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lines changed Original file line number Diff line number Diff line change @@ -96,7 +96,7 @@ Once complete, a `singularity` folder containing the Singularity images will be
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# Set R library path to current working directory
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export R_LIBS_USER=$( pwd) /R_libs
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# Create the specified R library path if it doesn't already exist
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- mkdir -p $R_LIBS
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+ mkdir -p $R_LIBS_USER
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# Set Singularity cache directory
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export SINGULARITY_CACHEDIR=$( pwd) /singularity
@@ -217,6 +217,11 @@ If the reference table does not specify an annotations database for the target o
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``` bash
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# Set R library path if not already set
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export R_LIBS_USER=$( pwd) /R_libs
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+ # Create the specified R library path if it doesn't already exist
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+ mkdir -p $R_LIBS_USER
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+
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+ # Set Singularity cache directory if not already set
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+ export SINGULARITY_CACHEDIR=$( pwd) /singularity
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singularity exec \
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--bind $( pwd) :$( pwd) \
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