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@nadeemlab

Nadeem Lab @ Memorial Sloan Kettering Cancer Center

Integrative Biomedical Data Analysis Lab (macro: radiology/surgery + meso: pathology + micro: molecular)

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  1. DeepLIIF DeepLIIF Public

    Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23, MICCAI'24]

    Python 196 76

  2. CEP CEP Public

    Computational Endoscopy Platform (advanced deep learning toolset for analyzing endoscopy videos) [MICCAI'25, MICCAI'22, MICCAI'21, ISBI'21, CVPR'20]

    Python 73 11

  3. Physics-ArX Physics-ArX Public

    Physics-based data augmentation library for quantifying CT and CBCT images in radiotherapy [PMB'23, PMB'21, Medical Physics'21, AAPM'21]

    Python 63 16

  4. DoseRTX DoseRTX Public

    Domain knowledge driven 3D radiation dose prediction [PMB'22]

    Python 45 9

  5. ImPartial ImPartial Public

    Interactive deep learning whole-cell segmentation and thresholding using partial annotations

    Jupyter Notebook 39 3

  6. SPT SPT Public

    Spatial profiling toolbox for spatial characterization of tissue microenvironment (https://oncopathtk.org)

    Python 22 2

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