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@msk-access

CMO Cell-Free DNA (cfDNA) Informatics Team

This organization is created to host all the codebase related to cfDNA based assay in CMO at MSKCC

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  1. cwl-commandlinetools cwl-commandlinetools Public

    Forked from mskcc/cwl-commandlinetools

    Central location for CWL CommandLineTools

    Common Workflow Language 5

  2. access_data_analysis access_data_analysis Public

    Scripts for downstream analysis plotting of pipeline output

    R 7

  3. biometrics biometrics Public

    Python package to calculate various sample contamination metrics.

    Python 8 2

  4. nucleo nucleo Public

    Workflow that creates all the BAM files for the cfDNA assay based FASTQ file at MSK

    Common Workflow Language 3 1

  5. nucleo_qc nucleo_qc Public

    Quality Control Workflow for UMI based BAMs

    Common Workflow Language 1

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