Code and data for "Disentangling network topology and pathogen spread" available at https://www.medrxiv.org/content/10.1101/2021.05.24.21257706v1.
For any questions please write me at maria.perez@ucl.ac.uk
This repository includes two folders:
- Results: Folder including two csv files with the 30 computed network metrics and simulation results for more than 9000 social graphs.
- Code: Folder including the code to generate the network metrics and run the simulations. The code relies on a modified version of the simulator in https://github.com/ryansmcgee/seirsplus. The code uses static paths so please make sure to change those before running it! There are a few example scripts to run the code (some of which use parallelization).