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1. TREE-QMC TREE-QMC Public

   Species tree estimation from gene trees via weighted quartets

   C++ 8 2

2. Dollo-CDP Dollo-CDP Public

   Phylogeny estimation from binary characters via Dollo parsimony

   C++ 4

3. ck-phylo-workshop ck-phylo-workshop Public

   Coalescent Lab at 2024 Workshop on Phylogenomics @ Cesky Krumlov

   Python 1

4. Star-CDP Star-CDP Public

   Cell lineage tree estimation via Star Homoplasy parsimony; also applicable to Camin-Sokal parsimony with binary characters

   C++ 1