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New assembly feature and fixes

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@mikessh mikessh released this 01 Sep 00:15
· 82 commits to master since this release
1.2.2
0270b0b

Features added

  • Writing FASTQ with unmapped CDR3 with --unmapped-fastq-file in CdrBlast
  • Some TRBV pseudogenes for mouse
  • Option to use only the first read in Assemble and Histogram (--only-first-read), useful for non-oriented reads when reverse read quality is very poor

Fixes

  • Some CLI fixes, changed exit error codes
  • Fix bug with incorrect calculation of min read size in Assemble
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