meal_cgm

Preprocessing of CGM data, run the following script one by one (./cgm/preprocessing).

preprocess.py
preprocess.r
qc_plot.m

Feature extraction, run the ./cgm/feature_extraction/manual_feature.py and plot by /cgm/visualization/figures_cgm_features.py

Analysis, run run_analysis.r

Dependencies

Please refer to the [supplementary files](To be added soon) for the R and Python environment. The scripts have been tested on Mac OS.

Installation

Please clone the code and run.

Demo

We provide a demo on CGM processing and feature extraction. The processed and smoothed CGM data can be found [here](To be added soon). The user can run cgm/feature_extraction/manual_feature.py and cgm/visualization/figures_cgm_features.py in order to extract CGM features and visualize the features. Required time for downloading and running should be brief.