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METASPACE

Scientific project on metabolite annotation of big data from imaging mass spectrometry

9 followers
EMBL, Heidelberg, Germany
http://metaspace2020.eu
theodore.alexandrov@embl.de

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metaspace metaspace Public

Cloud engine and platform for metabolite annotation for imaging mass spectrometry

TypeScript 50 12

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Showing 10 of 21 repositories

metaspace Public
Cloud engine and platform for metabolite annotation for imaging mass spectrometry

metaspace2020/metaspace’s past year of commit activity

TypeScript 50 Apache-2.0 12 91 5 Updated May 27, 2025
metaspace-converter Public
Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData

metaspace2020/metaspace-converter’s past year of commit activity

Python 11 Apache-2.0 1 3 1 Updated Mar 16, 2024
Lithops-METASPACE Public
Lithops-based Serverless implementation of the METASPACE spatial metabolomics annotation pipeline

metaspace2020/Lithops-METASPACE’s past year of commit activity

Jupyter Notebook 12 4 3 2 Updated Jul 6, 2023
offsample Public
Project to develop methods to recognize off-sample mass spectrometry images

metaspace2020/offsample’s past year of commit activity

Jupyter Notebook 6 0 0 0 Updated Oct 8, 2020
coloc Public
Methods for measuring co-localization of ion images

metaspace2020/coloc’s past year of commit activity

Vue 9 Apache-2.0 3 2 0 Updated Oct 7, 2020
pixel-annot-export Public archive
Metaspace pixel annotation export snapshots

metaspace2020/pixel-annot-export’s past year of commit activity

Jupyter Notebook 0 MIT 0 0 0 Updated Apr 14, 2019
sm-engine Public archive
Engine for metabolite annotation for imaging mass spectrometry

metaspace2020/sm-engine’s past year of commit activity

Python 7 Apache-2.0 5 0 0 Updated Jul 30, 2018
sm-engine-ansible Public archive
Setting up cloud infrastructure for the engine using Ansible

metaspace2020/sm-engine-ansible’s past year of commit activity

Python 2 Apache-2.0 6 0 1 Updated Jun 29, 2018
sm-molecular-db Public archive
Unified REST API for molecular database data

metaspace2020/sm-molecular-db’s past year of commit activity

Python 0 Apache-2.0 0 0 0 Updated Jun 28, 2018
metadata Public archive
Metadata for imaging mass spectrometry

metaspace2020/metadata’s past year of commit activity

1 Apache-2.0 2 0 0 Updated Jun 28, 2018

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