Skip to content
This repository was archived by the owner on Sep 18, 2023. It is now read-only.

[master < T350] Add graphml docs #1020

Open
wants to merge 6 commits into
base: master
Choose a base branch
from
Open

[master < T350] Add graphml docs #1020

Show file tree
Hide file tree
Changes from 4 commits
Commits
Show all changes
6 commits
Select commit Hold shift + click to select a range
bcb7b99
add graphml docs
ind1xa Aug 25, 2023
983235a
add examples
ind1xa Aug 28, 2023
a25a322
add import data
ind1xa Sep 7, 2023
d02866a
Apply suggestions from code review
vpavicic Sep 8, 2023
a8225d2
PR review changes
ind1xa Sep 9, 2023
a60be34
Merge branch 'T350-MAGE-add-graphml-docs' of https://github.com/memgr…
ind1xa Sep 9, 2023
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
Binary file added mage/data/query-modules/python/import-util/import_util_graphml.png
View file
Open in desktop
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
217 changes: 212 additions & 5 deletions mage/query-modules/python/export-util.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -21,7 +21,7 @@ export const Highlight = ({children, color}) => (
);

Module for exporting a graph database or query results in different formats. Currently, this
module supports [**exporting database to a JSON file format**](#jsonpath) and [**exporting query results in a CSV file format**](#csv_queryquery-file_path-stream).
module supports [**exporting database to a JSON file format**](#jsonpath), [**exporting query results in a CSV file format**](#csv_queryquery-file_path-stream) and [**exporting database to a graphML file format**](#graphmlpath-config).

[![docs-source](https://img.shields.io/badge/source-export_util-FB6E00?logo=github&style=for-the-badge)](https://github.com/memgraph/mage/blob/main/python/export_util.py)

Expand Down Expand Up @@ -165,6 +165,83 @@ where `path` is the path to a local CSV file that will be created inside the

</Tabs>

### `graphml(path, config)`

#### Input:

* `path: string` ➡ path to the graphML file that will contain the exported graph database.
* `config: Map (default={})` ➡ configuration parameters explained below.

#### Parameters:

| Name | Type | Default | Description |
|- |- |- |- |
| stream | Bool | False | Stream the file content directly to the client into the status field. |
| format | String | " " | Set the export format to either "gephi" or "tinkerpop". |
| caption | List | [ ] | A list of keys of properties whose value is eligible as value for the `label` data element in Gephi format. Order is important and if no match is found, then there is a fallback to the node's first property. If the node has no properties then the ID is used. |
| useTypes | Bool | False | Store property values' type information. |
| leaveOutLabels | Bool | False | Do not store node's labels. |
| leaveOutProperties | Bool | False | Do not store node's properties. |

#### Output:

* `status: string` ➡ file content if stream is set to `True` in configuration parameters, `success` otherwise.

#### Usage:

The `path` you have to provide as procedure argument depends on how you started
Memgraph.

<Tabs
groupId="export_to_json_usage"
defaultValue="docker"
values={[
{label: 'Docker', value: 'docker'},
{label: 'Linux', value: 'linux'},
]
}>

<TabItem value="docker">

If you ran Memgraph with Docker, database will be exported to a graphML file inside
the Docker container. We recommend exporting the database to the graphML file
inside the `/usr/lib/memgraph/query_modules` directory.

You can call the procedure by running the following query:

```cypher
CALL export_util.graphml(path);
```
where `path` is the path to the JSON file inside the
Copy link
Collaborator

@vpavicic vpavicic Sep 8, 2023 •
edited
Loading

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

JSON or graphml?

`/usr/lib/memgraph/query_modules` directory in the running Docker container (e.g.,
`/usr/lib/memgraph/query_modules/export.graphml`).

:::info
You can [**copy the exported CSV file to your local file system**](/memgraph/how-to-guides/work-with-docker#how-to-copy-files-from-and-to-a-docker-container) using the [`docker cp`](https://docs.docker.com/engine/reference/commandline/cp/) command.
:::
</TabItem>

<TabItem value="linux">

To export database to a local graphML file create a new directory (for example,
`export_folder`) and run the following command to give the user `memgraph` the
necessary permissions:

```
sudo chown memgraph export_folder
```

Then, call the procedure by running the following query:

```cypher
CALL export_util.graphml(path);
```
where `path` is the path to a local JSON file that will be created inside the
Copy link
Collaborator

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Suggested change
where `path` is the path to a local JSON file that will be created inside the
where `path` is the path to a local JSON file that will be created inside the

again, json?

`export_folder` (e.g., `/users/my_user/export_folder/export.graphml`).
</TabItem>

</Tabs>


## Example - Exporting database to a JSON file

Expand Down Expand Up @@ -306,8 +383,8 @@ You can create a simple graph database by running the following queries:
```cypher
CREATE (StrangerThings:TVShow {title:'Stranger Things', released:2016, program_creators:['Matt Duffer', 'Ross Duffer']})
CREATE (Eleven:Character {name:'Eleven', portrayed_by:'Millie Bobby Brown'})
CREATE (JoyceByers:Character {name:'Joyce Byers', portrayed_by:'Millie Bobby Brown'})
CREATE (JimHopper:Character {name:'Jim Hopper', portrayed_by:'Millie Bobby Brown'})
CREATE (JoyceByers:Character {name:'Joyce Byers', portrayed_by:'Winona Ryder'})
CREATE (JimHopper:Character {name:'Jim Hopper', portrayed_by:'David Harbour'})
Comment on lines +386 to +387
Copy link
Collaborator

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

I noticed this once and I was like... will i fix this... is this worth opening a PR for :D :D naaaah... :D thnx

CREATE (MikeWheeler:Character {name:'Mike Wheeler', portrayed_by:'Finn Wolfhard'})
CREATE (DustinHenderson:Character {name:'Dustin Henderson', portrayed_by:'Gaten Matarazzo'})
CREATE (LucasSinclair:Character {name:'Lucas Sinclair', portrayed_by:'Caleb McLaughlin'})
Expand Down Expand Up @@ -376,8 +453,8 @@ The output in the `export.csv` file looks like this:
```csv
name,portrayed_by,title,released,program_creators
Eleven,Millie Bobby Brown,Stranger Things,2016,"['Matt Duffer', 'Ross Duffer']"
Joyce Byers,Millie Bobby Brown,Stranger Things,2016,"['Matt Duffer', 'Ross Duffer']"
Jim Hopper,Millie Bobby Brown,Stranger Things,2016,"['Matt Duffer', 'Ross Duffer']"
Joyce Byers,Winona Ryder,Stranger Things,2016,"['Matt Duffer', 'Ross Duffer']"
Jim Hopper,David Harbour,Stranger Things,2016,"['Matt Duffer', 'Ross Duffer']"
Mike Wheeler,Finn Wolfhard,Stranger Things,2016,"['Matt Duffer', 'Ross Duffer']"
Dustin Henderson,Gaten Matarazzo,Stranger Things,2016,"['Matt Duffer', 'Ross Duffer']"
Lucas Sinclair,Caleb McLaughlin,Stranger Things,2016,"['Matt Duffer', 'Ross Duffer']"
Expand All @@ -392,3 +469,133 @@ Erica Sinclair,Priah Ferguson,Stranger Things,2016,"['Matt Duffer', 'Ross Duffer
</TabItem>

</Tabs>

## Example - Exporting database to a graphML file

<Tabs
groupId="export_to_graphml_example"
defaultValue="input"
values={[
{label: 'Step 1: Cypher load commands', value: 'load'},
{label: 'Step 2: Input graph', value: 'input'},
{label: 'Step 3: Running command', value: 'run'},
{label: 'Step 4: Results', value: 'result'},
]
}>

<TabItem value="load">

You can create a simple graph database by running the following queries:

```cypher
CREATE (StrangerThings:TVShow {title:'Stranger Things', released:2016, program_creators:['Matt Duffer', 'Ross Duffer']})
CREATE (Eleven:Character {name:'Eleven', portrayed_by:'Millie Bobby Brown'})
CREATE (JoyceByers:Character {name:'Joyce Byers', portrayed_by:'Winona Ryder'})
CREATE (JimHopper:Character {name:'Jim Hopper', portrayed_by:'David Harbour'})
CREATE (MikeWheeler:Character {name:'Mike Wheeler', portrayed_by:'Finn Wolfhard'})
CREATE (DustinHenderson:Character {name:'Dustin Henderson', portrayed_by:'Gaten Matarazzo'})
CREATE (LucasSinclair:Character {name:'Lucas Sinclair', portrayed_by:'Caleb McLaughlin'})
CREATE (NancyWheeler:Character {name:'Nancy Wheeler', portrayed_by:'Natalia Dyer'})
CREATE (JonathanByers:Character {name:'Jonathan Byers', portrayed_by:'Charlie Heaton'})
CREATE (WillByers:Character {name:'Will Byers', portrayed_by:'Noah Schnapp'})
CREATE (SteveHarrington:Character {name:'Steve Harrington', portrayed_by:'Joe Keery'})
CREATE (MaxMayfield:Character {name:'Max Mayfield', portrayed_by:'Sadie Sink'})
CREATE (RobinBuckley:Character {name:'Robin Buckley', portrayed_by:'Maya Hawke'})
CREATE (EricaSinclair:Character {name:'Erica Sinclair', portrayed_by:'Priah Ferguson'})
CREATE
(Eleven)-[:ACTED_IN {seasons:[1, 2, 3, 4]}]->(StrangerThings),
(JoyceByers)-[:ACTED_IN {seasons:[1, 2, 3, 4]}]->(StrangerThings),
(JimHopper)-[:ACTED_IN {seasons:[1, 2, 3, 4]}]->(StrangerThings),
(MikeWheeler)-[:ACTED_IN {seasons:[1, 2, 3, 4]}]->(StrangerThings),
(DustinHenderson)-[:ACTED_IN {seasons:[1, 2, 3, 4]}]->(StrangerThings),
(LucasSinclair)-[:ACTED_IN {seasons:[1, 2, 3, 4]}]->(StrangerThings),
(NancyWheeler)-[:ACTED_IN {seasons:[1, 2, 3, 4]}]->(StrangerThings),
(JonathanByers)-[:ACTED_IN {seasons:[1, 2, 3, 4]}]->(StrangerThings),
(WillByers)-[:ACTED_IN {seasons:[1, 2, 3, 4]}]->(StrangerThings),
(SteveHarrington)-[:ACTED_IN {seasons:[1, 2, 3, 4]}]->(StrangerThings),
(MaxMayfield)-[:ACTED_IN {seasons:[2, 3, 4]}]->(StrangerThings),
(RobinBuckley)-[:ACTED_IN {seasons:[3, 4]}]->(StrangerThings),
(EricaSinclair)-[:ACTED_IN {seasons:[2, 3, 4]}]->(StrangerThings);
```
</TabItem>

<TabItem value="input">

The image below shows the above data as a graph:

<img src={require('../../data/query-modules/python/export-util/export-util-csv-1.png').default}/>

</TabItem>

<TabItem value="run">

If you're using **Memgraph with Docker**, the following Cypher query will
export the database to the `export.graphml` file in the
`/usr/lib/memgraph/query_modules` directory inside the running Docker container.

```cypher
CALL export_util.graphml("/usr/lib/memgraph/query_modules/export.graphml, {useTypes: true})
YIELD status RETURN status;
```

If you're using **Memgraph on Ubuntu, Debian, RPM package or WSL**, the
following Cypher query will export the database to the `export.graphml` file in the
`/users/my_user/export_folder`.

```cypher
CALL export_util.graphml("/users/my_user/export_folder/export.graphml, {useTypes: true})
YIELD status RETURN status;
```

</TabItem>

<TabItem value="result">

The output in the `export.graphml` file looks like this:


```xml
<?xml version="1.0" encoding="UTF-8"?>
<graphml xmlns="http://graphml.graphdrawing.org/xmlns" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://graphml.graphdrawing.org/xmlns http://graphml.graphdrawing.org/xmlns/1.0/graphml.xsd">
<key id="labels" for="node" attr.name="labels" attr.type="string"/>
<key id="title" for="node" attr.name="title" attr.type="string"/>
<key id="released" for="node" attr.name="released" attr.type="int"/>
<key id="program_creators" for="node" attr.name="program_creators" attr.type="string" attr.list="string"/>
<key id="name" for="node" attr.name="name" attr.type="string"/>
<key id="portrayed_by" for="node" attr.name="portrayed_by" attr.type="string"/>
<key id="label" for="edge" attr.name="label" attr.type="string"/>
<key id="seasons" for="edge" attr.name="seasons" attr.type="string" attr.list="int"/>
<graph id="G" edgedefault="directed">
<node id="n0" labels=":TVShow"><data key="labels">:TVShow</data><data key="title">Stranger Things</data><data key="released">2016</data><data key="program_creators">["Matt Duffer", "Ross Duffer"]</data></node>
<node id="n1" labels=":Character"><data key="labels">:Character</data><data key="name">Eleven</data><data key="portrayed_by">Millie Bobby Brown</data></node>
<node id="n2" labels=":Character"><data key="labels">:Character</data><data key="name">Joyce Byers</data><data key="portrayed_by">Winona Ryder</data></node>
<node id="n3" labels=":Character"><data key="labels">:Character</data><data key="name">Jim Hopper</data><data key="portrayed_by">David Harbour</data></node>
<node id="n4" labels=":Character"><data key="labels">:Character</data><data key="name">Mike Wheeler</data><data key="portrayed_by">Finn Wolfhard</data></node>
<node id="n5" labels=":Character"><data key="labels">:Character</data><data key="name">Dustin Henderson</data><data key="portrayed_by">Gaten Matarazzo</data></node>
<node id="n6" labels=":Character"><data key="labels">:Character</data><data key="name">Lucas Sinclair</data><data key="portrayed_by">Caleb McLaughlin</data></node>
<node id="n7" labels=":Character"><data key="labels">:Character</data><data key="name">Nancy Wheeler</data><data key="portrayed_by">Natalia Dyer</data></node>
<node id="n8" labels=":Character"><data key="labels">:Character</data><data key="name">Jonathan Byers</data><data key="portrayed_by">Charlie Heaton</data></node>
<node id="n9" labels=":Character"><data key="labels">:Character</data><data key="name">Will Byers</data><data key="portrayed_by">Noah Schnapp</data></node>
<node id="n10" labels=":Character"><data key="labels">:Character</data><data key="name">Steve Harrington</data><data key="portrayed_by">Joe Keery</data></node>
<node id="n11" labels=":Character"><data key="labels">:Character</data><data key="name">Max Mayfield</data><data key="portrayed_by">Sadie Sink</data></node>
<node id="n12" labels=":Character"><data key="labels">:Character</data><data key="name">Robin Buckley</data><data key="portrayed_by">Maya Hawke</data></node>
<node id="n13" labels=":Character"><data key="labels">:Character</data><data key="name">Erica Sinclair</data><data key="portrayed_by">Priah Ferguson</data></node>
<edge id="e0" source="n1" target="n0" label="ACTED_IN"><data key="label">ACTED_IN</data><data key="seasons">[1, 2, 3, 4]</data></edge>
<edge id="e1" source="n2" target="n0" label="ACTED_IN"><data key="label">ACTED_IN</data><data key="seasons">[1, 2, 3, 4]</data></edge>
<edge id="e2" source="n3" target="n0" label="ACTED_IN"><data key="label">ACTED_IN</data><data key="seasons">[1, 2, 3, 4]</data></edge>
<edge id="e3" source="n4" target="n0" label="ACTED_IN"><data key="label">ACTED_IN</data><data key="seasons">[1, 2, 3, 4]</data></edge>
<edge id="e4" source="n5" target="n0" label="ACTED_IN"><data key="label">ACTED_IN</data><data key="seasons">[1, 2, 3, 4]</data></edge>
<edge id="e5" source="n6" target="n0" label="ACTED_IN"><data key="label">ACTED_IN</data><data key="seasons">[1, 2, 3, 4]</data></edge>
<edge id="e6" source="n7" target="n0" label="ACTED_IN"><data key="label">ACTED_IN</data><data key="seasons">[1, 2, 3, 4]</data></edge>
<edge id="e7" source="n8" target="n0" label="ACTED_IN"><data key="label">ACTED_IN</data><data key="seasons">[1, 2, 3, 4]</data></edge>
<edge id="e8" source="n9" target="n0" label="ACTED_IN"><data key="label">ACTED_IN</data><data key="seasons">[1, 2, 3, 4]</data></edge>
<edge id="e9" source="n10" target="n0" label="ACTED_IN"><data key="label">ACTED_IN</data><data key="seasons">[1, 2, 3, 4]</data></edge>
<edge id="e10" source="n11" target="n0" label="ACTED_IN"><data key="label">ACTED_IN</data><data key="seasons">[2, 3, 4]</data></edge>
<edge id="e11" source="n12" target="n0" label="ACTED_IN"><data key="label">ACTED_IN</data><data key="seasons">[3, 4]</data></edge>
<edge id="e12" source="n13" target="n0" label="ACTED_IN"><data key="label">ACTED_IN</data><data key="seasons">[2, 3, 4]</data></edge>
</graph>
</graphml>
```
</TabItem>

</Tabs>
Loading