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Please use set -e (ideally set -euo pipefail) in smaltalign*.sh shell scripts to make them fail early & loudly

Status: Open.

#13 In medvir/SmaltAlign;

· Masterxilo opened on Aug 11, 2023

Please document how to download, install and run this program in your preferred way

Status: Open.

#11 In medvir/SmaltAlign;

· Masterxilo opened on Jan 27, 2023

Please parametrize: minimal coverage required (reads), minimal_coverage <- 3

Status: Open.

#10 In medvir/SmaltAlign;

· Masterxilo opened on Jan 27, 2023

Please parametrize: minority variant threshold (%) variant_threshold <- 15

Status: Open.

#9 In medvir/SmaltAlign;

· Masterxilo opened on Jan 27, 2023

"unexpected insertion" error

Status: Open.

#8 In medvir/SmaltAlign;

· MaryamZaheri opened on Sep 17, 2021

wts.R creates wobble Positionen with AF >90%

Status: Open.

#6 In medvir/SmaltAlign;

· sschmutz opened on Jun 10, 2021