Pinned Loading

1. MAGE MAGE Public

   Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discovery and annotation.

   R 40 4

2. karyohmm karyohmm Public

   Implementation of the karyoHMM model for assessing aneuploidy in PGT data

   Python

3. LD-PGTA LD-PGTA Public

   Linkage disequlibrium-informed PGT-A (LD-PGTA). A package for detecting genotypic signatures of aneuploidy from extremely low-coverage sequence data.

   Python 18 1

4. t2t-variants t2t-variants Public

   Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".

   R 17 3

5. hgv_modules hgv_modules Public

   Teaching modules for Human Genome Variation Lab.

   R 20 4

6. rhapsodi rhapsodi Public

   R haploid sperm/oocyte data imputation (rhapsodi). A package for analysis of low-coverage single-cell sequencing data from multiple gametes.

   R 4