Merge pull request #6 from maziyarpanahi/dev_zeroshot #38
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| name: CI | |
| on: | |
| push: | |
| branches: [ main, master, develop ] | |
| pull_request: | |
| branches: [ main, master, develop ] | |
| jobs: | |
| test: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, windows-latest, macos-latest] | |
| python-version: ["3.10", "3.11", "3.12"] | |
| exclude: | |
| # Exclude some combinations to reduce CI time | |
| - os: windows-latest | |
| python-version: "3.10" | |
| - os: macos-latest | |
| python-version: "3.10" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Cache pip packages | |
| uses: actions/cache@v4 | |
| with: | |
| path: ~/.cache/pip | |
| key: ${{ runner.os }}-pip-${{ hashFiles('**/pyproject.toml') }} | |
| restore-keys: | | |
| ${{ runner.os }}-pip- | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -e ".[dev]" | |
| - name: Lint with flake8 | |
| run: | | |
| # Stop the build if there are Python syntax errors or undefined names | |
| flake8 openmed --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # Exit-zero treats all errors as warnings | |
| flake8 openmed --count --exit-zero --max-complexity=10 --max-line-length=88 --statistics | |
| - name: Test with pytest | |
| run: | | |
| pytest --cov=openmed --cov-report=xml --cov-report=term-missing | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| file: ./coverage.xml | |
| flags: unittests | |
| name: codecov-umbrella | |
| fail_ci_if_error: false | |
| security: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.11" | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install bandit[toml] safety | |
| - name: Run security check with bandit | |
| run: | | |
| bandit -r openmed -f json -o bandit-report.json | |
| continue-on-error: true | |
| - name: Run safety check | |
| run: | | |
| safety check --json --output safety-report.json | |
| continue-on-error: true | |
| - name: Upload security reports | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: security-reports | |
| path: | | |
| bandit-report.json | |
| safety-report.json | |
| if: always() | |
| build: | |
| needs: [test, security] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.11" | |
| - name: Install build dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install build | |
| - name: Build package | |
| run: | | |
| python -m build | |
| - name: Upload build artifacts | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: dist-packages | |
| path: dist/ |