🎓 Practice 2 - Rmarkdown

Structure of the research compendium of the practice 2 of the workshop Data Toolbox for Reproducible Research in Ecology https://rdatatoolbox.github.io/ex-rmarkdown.html.

Content

This repository is structured as follow:

• data/: contains all raw data required to perform analyses

• R/: contains R functions developed especially for this project

• man/: contains help files of R functions

• DESCRIPTION: contains project metadata (author, date, dependencies, etc.)

• index.Rmd: contains the entire analysis

• make.R: main R script to run the entire project by rendering the index.Rmd

Usage

Clone the repository, open R/RStudio and run:

source("make.R")

Notes

• All required packages, listed in the DESCRIPTION file, will be installed (if necessary)
• All required packages and R functions will be loaded
• Some analyses listed in the make.R might take time

How to cite

Casajus N, Bonnici I, Dray S, Gimenez O, Guéry L, Guilhaumon F, Schiettekatte NMD & Siberchicot A (2022) Workshop FRB-CESAB & GdR EcoStat: Data Toolbox for Reproducible Research in Computational Ecology. Zenodo. http://doi.org/10.5281/zenodo.4262978.