This is an example of wrapping sparse kernels from scipy.sparse with bindthem: https://github.com/lukeolson/bindthem

Requirements

This script uses

• OpenMP
• omp_thread_count
• scipy
• tqdm

How to use

0. Modify setup.py with your (openmp supported) compiler

1. Build the sparse library

python setup.py build_ext --inplace

2. Run the benchmark

python benchmark --scipy --openmp

See run.sh for a full run.

Notes

• You need OpenMP support in your compiler. On a mac, brew install llvm libomp will work
• Put the path for your compiler in setup.py

Example Output

THis uses analyze-data.ipynb