NOTE

The most up to date version of the q2-SCNIC repo is here!

q2-SCNIC

A package for accessing the primary methods of SCNIC via QIIME2.

Installation

First, make sure you have SCNIC installed:

conda install -q scnic

OR

pip install scnic

Next to install the plugin:

pip install git+https://github.com/lozuponelab/q2-SCNIC.git
qiime dev refresh-cache

Finally to see what functions are available, you can use:

qiime SCNIC --help

Tutorial

The tutorial for q2-SCNIC can be found in community_tutorial.md.