I'm a PhD candidate specializing in computational biology and data science, currently researching cell migration dynamics using zebrafish as a model system. I bridge the gap between biological research and data-driven insights, transforming complex biological phenomena into actionable data through advanced computational methods.

🔬 Current Focus: Analyzing in vivo cell migration patterns of zebrafish primordial germ cells (PGCs) as a model for amoeboidal migration
🎯 Goal: Leveraging data science to untangle how cells move in complex in vivo environments

• Deep Learning Segmentation: Cellpose & Segment Anything Model (SAM)
• Computational Vision & Feature Extraction
• scikit-image for biological image processing
• Fiji/Napari with JavaScript macro automation
• MATLAB for advanced image analysis (PIV)

• Cell Biology & Live Cell Imaging
• Microscopy & Advanced Imaging Techniques
• Molecular Cloning & Laboratory Techniques
• Bioinformatics & Statistical Analysis

Deep Learning-Based Cell Segmentation for Migration Analysis

• Implemented automated cell segmentation using Cellpose and Segment Anything Model (SAM)
• Developed preprocessing and postprocessing workflows for biological image analysis
• Integrated segmentation results with downstream migration tracking algorithms
• Achieved high-accuracy cell boundary detection for PGC migration studies
• Tech Stack: Python, Cellpose, SAM, scikit-image, OpenCV

Machine Learning for Biological Motion Analysis

• Developed computer vision algorithms to track and analyze zebrafish PGC migration patterns
• Implemented feature extraction techniques to quantify cell movement dynamics
• Built ML classification models to identify migration phenotypes
• Tech Stack: Python, scikit-image, pandas, XGBoost, matplotlib

FastAPI Service for Biological Image Analysis

• Created REST API for automated biological image processing workflows
• Integrated ImageJ/Fiji functionality for high-throughput analysis
• Implemented database storage for experimental metadata
• Tech Stack: FastAPI, Python, SQL, ImageJ macros

• 🔬 Developing novel computational methods for analyzing cell migration dynamics
• 🤖 Building machine learning models to predict biological outcomes
• 📊 Creating automated pipelines for high-throughput biological data analysis