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  1. Base_calling_accuracy_calculator.py Base_calling_accuracy_calculator.py Public

    ​​Calculates base calling accuracy using Phred Quality Scores for bases or read counts in NGS paired-end data.​

    Python

  2. ORF_all.sh ORF_all.sh Public

    This script sequentially truncates the N-terminal sequence preceding each methionine in the proteins, generates a series of redundant proteins termed ORF_shift proteins

    Python

  3. Peptide.py Peptide.py Public

    Peptide.py is a Python script that filters out proteins with medium or low FDR confidence, as well as peptides with an odd number of dehydro of Cysteine, due to their low probability.

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