TOPIC: Amplicons

A repository for the lessons and tutorials for the Amplicons TOPIC channel of the BVCN

Prerequisites

• Experience with R
• Experience with the command line

Overview

This BVCN topic will cover:

• the different approaches for analyzing amplicon data
• how to construct count tables, alignment files, and extract taxonomy from sequencing files
• statistical and data visualization techniques for analyzing amplicon data

Lesson 1

Title: Intro to Amplicons

Goals

• What are amplicons?
• What are the different pipelines for processing amplicon data?
• What are the available methods for producing count tables?

Watch the lesson

Access the presentation here