This repository contains code for fitting for the Multilevel Epidemic Regression Model to Account for Incomplete Data (MERMAID), and scripts for simulation studies, data pre-processing, and analysis for the manuscript, "Regression Models for Understanding COVID-19 Epidemic Dynamics with Incomplete Data."
src/contains R scripts for fitting the MERMAID model.simulation_scripts/contains R scripts for simulation studies presented in the manuscript.US_analysis_scripts/contains R scripts for pre-processing and analysis of COVID-19 reported case counts and seroprevalence surveys in the US from February to December 2020.data/contains raw and preprocessed data files.
Author contact information: rdey AT hsph.harvard.edu, corbinq AT gmail.com, or xlin AT hsph.harvard.edu.