Uses JOFC embedding of dissimilarities to embed graphs
The R files in /lib directory are utility and method functions
The R files in /src directory are simulation functions, appropriate for the datasets (most of which are in /data) One can run simulations in a SGE cluster using the sh files in the root of the repository: qsub -t <SGE_TASK_ID> ./run_Graph_match_<graph_data> where <SGE_TASK_ID> is a positive integer and <graph_data> is one of cnet, worm, wiki,or enron The simulation parameters are read from the file ./src/JOFC-graph_<graph_data>Params<SGE_TASK_ID>.R . See ./src/JOFC-graph_charitynet_Params_1.R for an example.