🫁 LOSTdb

a manually curated multi-omics database for lung cancer research

This repository contains partial code and tables relating to LOSTdb.

Scripts:

• RNA.R: Script containing RNA-seq analysis functions
• Proteomics.R: Script containing proteomics analysis functions
• 🧬Mutation.R: Script containing genomics analysis functions
• Methylation.R: Script containing methylation analysis functions
• scRNA.R: Script containing scRNA-seq analysis functions
• 🏥Sigclin.R: Script for significance analysis between clinical/meta data.
• 🎯Target.R: Script for target scoring.

📝Tables:

• datasets.xlsx: Dataset information in LOSTdb.
• subtypes.xlsx: Detailed information of molecular subtypes, including classical subtypes and multi-omics meta-program (MP) subtypes.
• clinical-metadata.xlsx: Manually curated clinical/meta data.