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1. BIOSTATS BIOSTATS Public

   Projects conducted in BTEC 530-Biostatics

   R

2. GenExpMatrix GenExpMatrix Public

   Use of RNAseq data from TCGA-BRCA and build a gene expression matrix (GEM) to map gene expression values across sample IDs.

   Python

3. DEG-Analysis-BRCA DEG-Analysis-BRCA Public

   Differential Gene Expression or DEG specifically analyzing BRCA to identify genes with significant expression changes between normal and tumorous tissue.

4. GEM-preprocessing GEM-preprocessing Public

   Preprocessing of RNAseq data from public repositories, merging datasets, and applying critical normalization methods to use data for genomic processing.

5. GDC-data_commons GDC-data_commons Public

   Find tumor gene mutation rates (TP53 and STAT5A) using cancer datasets from The Cancer Genome Atlas.

6. gene-reg-net-linking gene-reg-net-linking Public

   Link together the genes in a human GCN focusing on Uterus GTEX and TCGA to construct and analyze a gene co-expression network as a WHOLE.