Releases: laminlabs/bionty
Releases · laminlabs/bionty
Release 1.6.1
See https://docs.lamin.ai/changelog
What's Changed
- ♻️ Remove pronto warning filters from init.py by @namsaraeva in #284
- 🔈 Added loggings to
Ontology.to_df()
by @namsaraeva in #288 - ♻️ Adapt to renaming of
UPath.synchronize()
toUPath.synchronize_to()
by @Koncopd in #291 - 📝 Add missing docstrings by @Zethson in #294
- 🎨 Make sure ensembl organism has a
synonyms
column by @sunnyosun in #296 - 🩹 Add a fallback to
UPath.synchronize
ifUPath.synchronize_to
is not available by @Koncopd in #297 - ✨ Improve
import_source
testing by @namsaraeva in #273 - 🎨 Update visibility of
source.dataframe_artifact
by @sunnyosun in #299 - ♻️ Remove Disease constructor overloads by @namsaraeva in #292
- ♻️ New error message when url of ontology doesn't exist by @namsaraeva in #301
Full Changelog: 1.6.0...1.6.1
Release 1.6.1rc1
See https://docs.lamin.ai/changelog
What's Changed
- ♻️ Remove pronto warning filters from init.py by @namsaraeva in #284
- 🔈 Added loggings to
Ontology.to_df()
by @namsaraeva in #288 - ♻️ Adapt to renaming of
UPath.synchronize()
toUPath.synchronize_to()
by @Koncopd in #291 - 📝 Add missing docstrings by @Zethson in #294
- 🎨 Make sure ensembl organism has a
synonyms
column by @sunnyosun in #296 - 🩹 Add a fallback to
UPath.synchronize
ifUPath.synchronize_to
is not available by @Koncopd in #297 - ✨ Improve
import_source
testing by @namsaraeva in #273 - 🎨 Update visibility of
source.dataframe_artifact
by @sunnyosun in #299 - ♻️ Remove Disease constructor overloads by @namsaraeva in #292
- ♻️ New error message when url of ontology doesn't exist by @namsaraeva in #301
Full Changelog: 1.6.0...1.6.1rc1
Release 1.6.0
See https://docs.lamin.ai/changelog
What's Changed
- ✨ Add Mondo 2025-06-03 by @Zethson in #257
- 🎨 Use ln.save instead of bulk_create by @sunnyosun in #263
- 🐛 Fix
import_source
with non-existingparents
in the reference by @namsaraeva in #264 - 🎨 Ignore test warnings by @Zethson in #268
- ✨ Add new ontology versions & 🐛 fix registration bugs by @Zethson in #259
- 🚸 Ignore Pronto Warnings on import by @Zethson in #269
- 🎨 Fix typo by @Zethson in #274
- 🎨 Allow using public reference without prefix filters by @sunnyosun in #276
- 🎨 Do not upload dataframe if instance is bionty-assets by @sunnyosun in #279
- 🚑 Downgrade sources versions in sources.yaml by @namsaraeva in #278
- ♻️ Make treatment of Record link tables consistent with lamindb by @falexwolf in #281
- 🐛 Fix typo in backward field name by @falexwolf in #282
- ♻️ Squash migrations by @falexwolf in #283
New Contributors
- @namsaraeva made their first contribution in #264
Full Changelog: 1.5.0...1.6.0
Release 1.5.0
See https://docs.lamin.ai/changelog
What's Changed
- ✨ Flexible ontology sources by @sunnyosun in #250
- ♻️ No backward relationship on branch and space by @falexwolf in #256
Full Changelog: 1.4.1...1.5.0
Release 1.4.2
See https://docs.lamin.ai/changelog
What's Changed
- ✨ Flexible ontology sources by @sunnyosun in #250
- ♻️ No backward relationship on branch and space by @falexwolf in #256
Full Changelog: 1.4.1...1.4.2
Release 1.4.1
See https://docs.lamin.ai/changelog
What's Changed
- ✨ Add record links to every registry by @falexwolf in #254
Full Changelog: 1.4.0...1.4.1
Release 1.4.0
See https://docs.lamin.ai/changelog
What's Changed
- ♻️ Rename
Record
toDBRecord
by @falexwolf in #251
Full Changelog: 1.3.2...1.4.0
Release 1.4a1
See https://docs.lamin.ai/changelog
What's Changed
- ♻️ Rename
Record
toDBRecord
by @falexwolf in #251
Full Changelog: 1.3.2...1.4a1
Release 1.3.2
See https://docs.lamin.ai/changelog
What's Changed
- ♻️ Do not change global verbosity by @falexwolf in #245
- ♻️ Refactor uid encoding so that it becomes usable in the hub by @falexwolf in #247
Full Changelog: 1.3.1...1.3.2
Release 1.3.1
See https://docs.lamin.ai/changelog
What's Changed
- 🐛 Fix downloading old ensembl genes by @sunnyosun in #243
Full Changelog: 1.3.0...1.3.1