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27 followers · 110 following

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Achievements

Achievement: QuickdrawAchievement: StarstruckAchievement: Pull SharkAchievement: Public SponsorAchievement: Arctic Code Vault Contributor

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@CIS548 @kimpenn

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kuang-da/README.md

Hi there 👋

Hi! I am a final-year Ph.D. Candidate in the Department of Computer and Information Science at the University of Pennsylvania. My research focuses on deep learning and single-cell genomics, with a specific emphasis on reconstructing cell lineage trees using metric learning. I am also passionate about building data science tools to facilitate collaborative research.

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  1. CellTreeBench CellTreeBench Public

    Benchmark datasets and evaluation tools for reconstructing cell lineage trees from phenotypic data

    Jupyter Notebook 1

  2. kimpenn/aegle kimpenn/aegle Public

    2D segmentation and analysis pipeline for PhenoCycler images

    Jupyter Notebook 2 2

  3. lay_summary_llm lay_summary_llm Public

    End-to-end post-training alignment pipeline for generating lay summaries from scientific abstracts. Built with AI assistance (Cursor + Claude) to explore human-AI collaborative development.

    Python

  4. kimpenn/Argos kimpenn/Argos Public

    R/shiny interface for interactive of data wrangling in TIPeR Project

    R 1

  5. kimpenn/Theia kimpenn/Theia Public

    R/shiny interface for Kim Lab RNA-seq Pipeline Quality Control

    R 2

  6. kimpenn/aegle_patch_viewer kimpenn/aegle_patch_viewer Public

    Python