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ExpressionDB

In this project we will create a local postgres database for storing Expression data from leaf samples in plants. Several API calls will be made to various databases to retrieve datasets of interest.

Local dev environment:

  • Python: 3.13 (primary) and 3.9 (legacy)
  • Postgres: Docker (ports: 5432:5432)
  • VS Code: Python / Jupyter / Docker / GitHub Actions extensions

Quick start

# create envs 
uv venv -p 3.13 .venv
uv venv -p 3.9  .venv39
# activate and install deps as needed

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