Sofima Deployment

07/27/23: Hardcoded read from S3 aind-open-data, and hardcoded writes to GCS sofima-test-bucket. To transition to S3 aind-open-data writes on tensorstore s3 support: google/tensorstore#91

Define/Configure Inputs in config.yml.

Repository contains two (entrypoint, environment) pairs that correspond to independent capsules:

• Registration:

  • Script: register_dataset.py
  • Environment: registration_env.sh

• Fusion:

  • Script: fuse_and_multiscale.py
  • Environment: fuse_and_multiscale.sh