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1. scRNAseq_PBMCs scRNAseq_PBMCs Public

   Scripts & figures used to finish scRNA-seq analysis from seven porcine PBMC samples, detailed in the manuscript "Reference transcriptomes of porcine peripheral immune cells created through bulk and…

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2. Intraepithelial_T_cells Intraepithelial_T_cells Public

   Code associated with PERMANOVA and NMDS analyses of intraepithelial T cell data prepared for manuscript published in Frontiers in Immunology: "Intraepithelial T cells diverge by intestinal location…

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3. USDA-FSEPRU/PorcinePBMCs_bulkRNAseq_scRNAseq USDA-FSEPRU/PorcinePBMCs_bulkRNAseq_scRNAseq Public

   Scripts used for analysis of bulk RNA-seq, NanoString, and single-cell RNA-seq data from porcine PBMCs in the manuscript "Reference transcriptomes of porcine peripheral immune cells created through…

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4. Basic_Rstats Basic_Rstats Public

   Code for some basic statistical tests in R; set up for beginner R users from the lab to use as practice/template.