Merge pull request #214 from julianu/main #33
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| # This workflow will build a Java project with Maven, and cache/restore any dependencies to improve the workflow execution time | |
| # For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-java-with-maven | |
| # This workflow uses actions that are not certified by GitHub. | |
| # They are provided by a third-party and are governed by | |
| # separate terms of service, privacy policy, and support | |
| # documentation. | |
| name: Maven and Docker build | |
| on: | |
| push: | |
| branches: [ "main" ] | |
| pull_request: | |
| branches: [ "main" ] | |
| release: | |
| types: [ "published" ] | |
| jobs: | |
| maven_build: | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: write # needed by softprops/action-gh-release | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up JDK 21 | |
| uses: actions/setup-java@v4 | |
| with: | |
| distribution: 'temurin' | |
| java-version: '21' | |
| cache: maven | |
| - name: Build with Maven | |
| run: mvn -B package --settings ./.mvn/unblock-mirrors.xml --update-snapshots verify --file pom.xml | |
| # package as artifact | |
| - run: mkdir staging && cp target/*.jar staging && cp target/*.zip staging | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: pia-package | |
| path: staging | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v5 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| flags: unittests | |
| name: codecov-umbrella | |
| verbose: true | |
| - name: Release | |
| if: ${{ github.event_name == 'release' }} | |
| uses: softprops/action-gh-release@v2 | |
| with: | |
| files: | | |
| staging/*.zip | |
| build_and_push_docker: | |
| needs: maven_build | |
| runs-on: ubuntu-latest | |
| if: ${{ github.event_name == 'release' }} | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| - name: Extract Docker metadata | |
| id: meta | |
| uses: docker/metadata-action@v5 | |
| with: | |
| images: quay.io/medbioinf/pia | |
| labels: | | |
| org.opencontainers.image.title=PIA | |
| org.opencontainers.image.description=PIA - Protein Inference Algorithms | |
| - name: Build Image | |
| id: build-image | |
| uses: redhat-actions/buildah-build@v2 | |
| with: | |
| image: pia | |
| tags: quay.io/medbioinf/pia:latest ${{ steps.meta.outputs.tags }} | |
| containerfiles: | | |
| ./Dockerfile | |
| - name: Push to quay.io | |
| id: push-to-quay | |
| uses: redhat-actions/push-to-registry@v2 | |
| with: | |
| tags: ${{ steps.build-image.outputs.tags }} | |
| username: ${{ secrets.QUAY_ROBOT_ID }} | |
| password: ${{ secrets.QUAY_ROBOT_PW }} |