Search results

Warning in Python 3.13: unclosed database in <sqlite3.Connection object>

Status: Open.

#534 In jeromekelleher/sc2ts;

· hyanwong opened on Aug 14, 2025

Not capturing the origin of BA.1.1 cleanly

Status: Open.

#525 In jeromekelleher/sc2ts;

· jeromekelleher opened on Aug 8, 2025

Add IPython to the requirements?

Status: Open.

#523 In jeromekelleher/sc2ts;

· hyanwong opened on Jul 17, 2025

Dataset value to use in <code>run-hmm</code>: can we use a .vcz file?

Status: Open.

#522 In jeromekelleher/sc2ts;

· hyanwong opened on Jul 16, 2025

Use comparison with Usher to fine-tune

Status: Open.

#520 In jeromekelleher/sc2ts;

· jeromekelleher opened on Jul 6, 2025

Only read in necessary sample chunks in <code>Dataset.variants()</code>

enhancementNew feature or requestNew feature or request

Status: Open.

#517 In jeromekelleher/sc2ts;

· jeromekelleher opened on Jul 3, 2025

Don't make info functions necessary for import

Status: Open.

#496 In jeromekelleher/sc2ts;

· jeromekelleher opened on May 31, 2025

Add adjust breakpoints to postprocessing.

Status: Open.

#482 In jeromekelleher/sc2ts;

· jeromekelleher opened on Mar 4, 2025

Add ruff linting

Status: Open.

#446 In jeromekelleher/sc2ts;

· jeromekelleher opened on Dec 13, 2024

Remove plot_subgraph

Status: Open.

#445 In jeromekelleher/sc2ts;

· jeromekelleher opened on Dec 13, 2024

Add some prints at the start of infer

Status: Open.

#442 In jeromekelleher/sc2ts;

· jeromekelleher opened on Dec 12, 2024

Document infer command and toml format

Status: Open.

#439 In jeromekelleher/sc2ts;

· jeromekelleher opened on Dec 12, 2024