This project is based off the following challenge: https://www.aicrowd.com/challenges/imageclef-2022-tuberculosis-caverns-report
To run this code on your own device:
Use Google Drive to store the folders and Google Colab to run the scripts.
- Download the images in the Image Files folder
- Run the TB_Caverns_GZ_NII_to_JPG.ipynb in the TB_Caverns_Scripts folder to extract the .nii.gz files to JPGs. This is necessary for all of the models except 3D-CNN. Be sure to modify the file paths to your liking.
- Modify the file paths in all of the model files in the TB_Caverns_Scripts folder to match the file paths you set in step 2.
- Run whichever CNNs you want!