This repo is a base for diploma thesis project. The aim is to develop an interactive, graph-based web app designed to support oncologists in the personalization of cancer treatment.
- api
- pubtator_api = download articles from pubtator
- utils
- compute_embeddings = compute word embeddings for title+abstract field in articles
- xml_to_neo4j = extract the data from articles and save them into neo4j database
- compute_cosine_similarity = compute the similarity of word embeddings of articles and save the info about the most similar articles into neo4j
- parse_xml = helper functions to parse XML-structured pubtator articles
- web
- WIP
- Author: Jan Malý
- Diploma thesis supervisor: Vít Nováček