to create multiscale, first install poetry project and python dependencies:
- cd PATH_TO_POETRY_PROJECT_DIRECTORY/
- poetry install
Input format: zarr group with ome-ngff metadata
array naming convention within group: sN - where N is the resolution level
run script using cli:
poetry run python3 src/to_multiscale.py --workers=NUMBER_OF_DASK_WORKERS --data_origin=raw/segmentations --cluster=lsf/local --src=PATH_TO_ZARR_GROUP_WITH_OME-NGFF_METADATA