CLASTR WIP

.gitignore

@@ -25,6 +25,7 @@ share/python-wheels/
 .installed.cfg
 *.egg
 MANIFEST
+.conda/*
 
 # PyInstaller
 #  Usually these files are written by a python script from a template
@@ -152,4 +153,5 @@ cython_debug/
 #.idea/
 .DS_Store
 
-strprofiler.json
+strprofiler.json
+testing.xlsx

CHANGELOG.md

@@ -1,5 +1,12 @@
 # Changelog
 
+## v0.3.0
+
+**Release date:**
+
+ - Added ability to query the CLASTR API for single or batch queries from within the STRprofiler 
+ app - [#24](https://github.com/j-andrews7/strprofiler/pull/24).
+
 ## v0.2.0
 
 **Release date: 04/16/2024**

app.py

@@ -0,0 +1,3 @@
+from strprofiler.shiny_app.shiny_app import create_app
+
+app = create_app()

docs/requirements.txt

@@ -4,4 +4,6 @@ myst-parser
 rich-click
 shiny
 shinyswatch
-faicons
+faicons
+requests
+flatten-json

pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "strprofiler"
-version = "0.2.0"
+version = "0.3.0"
 description = "A simple python utility to compare short tandem repeat (STR) profiles."
 authors = ["Jared Andrews <jared.andrews07@gmail.com>",
            "Mike Lloyd <mike.lloyd@jax.org>"]
@@ -10,19 +10,22 @@ readme = "README.md"
 
 [tool.poetry.dependencies]
 python = ">=3.9,<4.0"
-pandas = "^1.4.3"
+pandas = "^2.2"
 rich-click = "^1.5.2"
 numpy = "^1.26.3"
 openpyxl = "^3.0.10"
-shiny = "^0.8.0"
+shiny = "^0.9.0"
 shinyswatch = "^0.4.2"
 Jinja2 = "^3.1.3"
 faicons = "^0.2.2"
+requests = "^2.31.0"
+flatten-json = "^0.1.14"
 
 [tool.poetry.dev-dependencies]
 
 [tool.poetry.scripts]
 strprofiler = 'strprofiler.strprofiler:strprofiler'
+clastr = 'strprofiler.clastr:clastr_batch_post_request'
 strprofiler-app = 'strprofiler.strprofiler:local_shiny_app'
 
 [build-system]

requirements.txt

@@ -1,8 +1,12 @@
 # Automatically generated by https://github.com/damnever/pigar.
 
+faicons==0.2.2
+flatten-json==0.1.14
 numpy==1.26.3
-pandas==1.5.3
+pandas==2.2.2
+requests==2.31.0
 rich-click==1.7.3
 shiny==0.8.1
 shinyswatch==0.4.2
-Jinja2==3.1.2
+Jinja2==3.1.2
+requests==2.31.0