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rework docs summarize_glm_count #241

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rework docs summarize_glm_count

rework docs summarize_glm_count #241

GitHub Actions / Unit Tests Summary failed Jul 22, 2024 in 0s

7 errors, 12 skipped, 824 pass in 1m 12s

    1 files  ±0     83 suites  ±0   1m 12s ⏱️ +4s
  843 tests ±0    824 ✅  - 7   12 💤 +1  0 ❌ ±0  7 🔥 +6 
1 805 runs   - 7  1 132 ✅  - 7  666 💤  - 6  0 ❌ ±0  7 🔥 +6 

Results for commit 1e69760. ± Comparison against earlier commit 3763d21.

Annotations

Check failure on line 0 in summarize_glm_count

See this annotation in the file changed.

@github-actions github-actions / Unit Tests Summary

s_glm_count_works_with_healthy_input (summarize_glm_count) with error 

tern.Rcheck/tests/testthat/junit-result.xml [took 0s]
Raw output 
Error in `s_glm_count(df = anl %>% filter(ARMCD == "ARM B"), .df_row = anl,  ('test-summarize_glm_count.R:309:3')
Error in `s_glm_count(df = anl %>% filter(ARMCD == "ARM B"), .df_row = anl, 
    .var = "AVAL", .in_ref_col = TRUE, variables = list(arm = "ARMCD", 
        offset = "lgTMATRSK", covariates = c("REGION1")), conf_level = 0.95, 
    distribution = "poisson", rate_mean_method = "emmeans")`: non-interactive browser() -- left over from debugging?
Backtrace:
    x
 1. \-tern:::s_glm_count(...) at test-summarize_glm_count.R:309:3

Check failure on line 0 in summarize_glm_count

See this annotation in the file changed.

@github-actions github-actions / Unit Tests Summary

s_glm_count_negative_binomial_works_with_healthy_input (summarize_glm_count) with error 

tern.Rcheck/tests/testthat/junit-result.xml [took 0s]
Raw output 
Error in `s_glm_count(df = anl %>% filter(ARMCD == "ARM B"), .df_row = anl,  ('test-summarize_glm_count.R:331:3')
Error in `s_glm_count(df = anl %>% filter(ARMCD == "ARM B"), .df_row = anl, 
    .var = "AVAL", .in_ref_col = TRUE, variables = list(arm = "ARMCD", 
        offset = "lgTMATRSK", covariates = c("REGION1")), conf_level = 0.95, 
    distribution = "negbin", rate_mean_method = "emmeans")`: non-interactive browser() -- left over from debugging?
Backtrace:
    x
 1. \-tern:::s_glm_count(...) at test-summarize_glm_count.R:331:3

Check failure on line 0 in summarize_glm_count

See this annotation in the file changed.

@github-actions github-actions / Unit Tests Summary

s_glm_count_works_with_no_reference_group_selected. (summarize_glm_count) with error 

tern.Rcheck/tests/testthat/junit-result.xml [took 0s]
Raw output 
Error in `s_glm_count(df = anl %>% filter(ARMCD == "ARM B"), .df_row = anl,  ('test-summarize_glm_count.R:353:3')
Error in `s_glm_count(df = anl %>% filter(ARMCD == "ARM B"), .df_row = anl, 
    .var = "AVAL", .in_ref_col = FALSE, .ref_group = anl %>% 
        filter(ARMCD == "ARM B"), variables = list(arm = "ARMCD", 
        offset = "lgTMATRSK", covariates = c("REGION1")), conf_level = 0.95, 
    distribution = "poisson", rate_mean_method = "emmeans")`: non-interactive browser() -- left over from debugging?
Backtrace:
    x
 1. \-tern:::s_glm_count(...) at test-summarize_glm_count.R:353:3

Check failure on line 0 in summarize_glm_count

See this annotation in the file changed.

@github-actions github-actions / Unit Tests Summary

s_glm_count_negative_binomial_works_with_no_reference_group_selected. (summarize_glm_count) with error 

tern.Rcheck/tests/testthat/junit-result.xml [took 0s]
Raw output 
Error in `s_glm_count(df = anl %>% filter(ARMCD == "ARM B"), .df_row = anl,  ('test-summarize_glm_count.R:377:3')
Error in `s_glm_count(df = anl %>% filter(ARMCD == "ARM B"), .df_row = anl, 
    .var = "AVAL", .in_ref_col = FALSE, .ref_group = anl %>% 
        filter(ARMCD == "ARM B"), variables = list(arm = "ARMCD", 
        offset = "lgTMATRSK", covariates = c("REGION1")), conf_level = 0.95, 
    distribution = "negbin", rate_mean_method = "emmeans")`: non-interactive browser() -- left over from debugging?
Backtrace:
    x
 1. \-tern:::s_glm_count(...) at test-summarize_glm_count.R:377:3

Check failure on line 0 in summarize_glm_count

See this annotation in the file changed.

@github-actions github-actions / Unit Tests Summary

summarize_glm_count_works_with_healthy_inputs (summarize_glm_count) with error 

tern.Rcheck/tests/testthat/junit-result.xml [took 0s]
Raw output 
Error: Error applying analysis function (var - AVAL): non-interactive browser() -- left over from debugging? ('test-summarize_glm_count.R:413:3')
Error: Error applying analysis function (var - AVAL): non-interactive browser() -- left over from debugging?
	occured at (row) path: root
Backtrace:
     x
  1. +-... %>% build_table(anl) at test-summarize_glm_count.R:413:3
  2. \-rtables::build_table(., anl)
  3.   \-base::lapply(...)
  4.     \-rtables (local) FUN(X[[i]], ...)
  5.       \-rtables:::recursive_applysplit(...)
  6.         +-rtables:::.make_split_kids(...)
  7.         \-rtables:::.make_split_kids(...)
  8.           \-rtables (local) .local(spl, have_controws, make_lrow, ...)
  9.             +-base::unlist(...)
 10.             \-base::lapply(...)
 11.               +-rtables (local) FUN(X[[i]], ...)
 12.               \-rtables (local) FUN(X[[i]], ...)
 13.                 \-rtables (local) .local(spl, have_controws, make_lrow, ...)
 14.                   \-rtables:::.make_analyzed_tab(...)

Check failure on line 0 in summarize_glm_count

See this annotation in the file changed.

@github-actions github-actions / Unit Tests Summary

summarize_glm_count_negative_binomial_works_with_healthy_inputs (summarize_glm_count) with error 

tern.Rcheck/tests/testthat/junit-result.xml [took 0s]
Raw output 
Error: Error applying analysis function (var - AVAL): non-interactive browser() -- left over from debugging? ('test-summarize_glm_count.R:444:3')
Error: Error applying analysis function (var - AVAL): non-interactive browser() -- left over from debugging?
	occured at (row) path: root
Backtrace:
     x
  1. +-... %>% build_table(anl) at test-summarize_glm_count.R:444:3
  2. \-rtables::build_table(., anl)
  3.   \-base::lapply(...)
  4.     \-rtables (local) FUN(X[[i]], ...)
  5.       \-rtables:::recursive_applysplit(...)
  6.         +-rtables:::.make_split_kids(...)
  7.         \-rtables:::.make_split_kids(...)
  8.           \-rtables (local) .local(spl, have_controws, make_lrow, ...)
  9.             +-base::unlist(...)
 10.             \-base::lapply(...)
 11.               +-rtables (local) FUN(X[[i]], ...)
 12.               \-rtables (local) FUN(X[[i]], ...)
 13.                 \-rtables (local) .local(spl, have_controws, make_lrow, ...)
 14.                   \-rtables:::.make_analyzed_tab(...)

Check failure on line 0 in utils_split_fun

See this annotation in the file changed.

@github-actions github-actions / Unit Tests Summary

summarize_ancova_works_as_expected_with_ref_group_position_last_split_fun (utils_split_fun) with error 

tern.Rcheck/tests/testthat/junit-result.xml [took 0s]
Raw output 
Error: Error applying analysis function (var - AVAL): non-interactive browser() -- left over from debugging? ('test-utils_split_fun.R:108:3')
Error: Error applying analysis function (var - AVAL): non-interactive browser() -- left over from debugging?
	occured at (row) path: root
Backtrace:
    x
 1. +-... %>% build_table(anl) at test-utils_split_fun.R:108:3
 2. \-rtables::build_table(., anl)
 3.   \-base::lapply(...)
 4.     \-rtables (local) FUN(X[[i]], ...)
 5.       \-rtables:::recursive_applysplit(...)
 6.         +-rtables:::.make_split_kids(...)
 7.         \-rtables:::.make_split_kids(...)
 8.           \-rtables (local) .local(spl, have_controws, make_lrow, ...)
 9.             \-rtables:::.make_analyzed_tab(...)
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