snomed-ct-loinc-data

Team Ownership - Product Owner

Data Team

Getting Started

Follow these instructions to generate a snomed-ct-loinc dataset:

1. Clone the snomed-ct-loinc-data repository

git clone [Rep URL]

2. Change local directory to snomed-ct-loinc-data

3. Download US or International RF2 Files from SNOMED CT: https://www.nlm.nih.gov/healthit/snomedct/index.html

4. Place the downloaded SnomedCT_*_.zip in your local Downloads directory.

5. Ensure the snomed-ct-loinc-data/pom.xml contains the proper tags containing source filename for the downloaded files such as: <source.zip>, <source.version>, etc.

6. Create a ~/Solor directory and ensure ~/Solor/generated-data does not exist or is empty.

7. You can create a reasoned or unreasoned dataset by either including or commenting out the snomed-ct-loinc-data/pom.xml snomed-ct-loinc-reasoner

8. Enter the following command to build the dataset:

mvn clean install -U "-DMaven.build.cache.enable=false"

9. Enter the following command to deploy the dataset:

mvn deploy -f snomed-ct-loinc-export "-DdeployToNexus=true" "-Dmaven.deploy.skip=true" "-Dmaven.build.cache.enabled=false"

• NOTE. This repo is built on top of an unreasoned spined array DB from snomed-ct-data. Therefore, make sure you have it built before running step #8.