Project P4_XY-Fe_Perumbeti, Impact of Sex and Smoking on Iron Transport Expression in Placenta

A compendium of code, data, and author's manuscript accompanying the manuscript:

This repository is organized as a reproducible research compendium.

File Organization

analysis/
|
├── logs/
│   └── log.md          # learning log for DSF
|
├── figures/            # location of the figures produced for the manuscript
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├── data/
│   └── RawData/        # data obtained from elsewhere
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└── supplementary-materials/
    ├── Supplementary_Figures/     
    |                   # supplementary figures for the main manuscript
    └── Supplementary_Tables/      
                        # supplementary tables for the main manuscript 

R/Python/etc.           # scripts to run in the following order (also see associated README.md)
    └── Script.R        # hypothetical R script used to wrangle the raw data, produce figures, analyses, and supplementary materials

Project P4_XY-Fe_Perumbeti

The project is analysis of placental transcriptome data for differences in iron transport gene expression in male and female smokers and non-smokers from 2 GEO dataset in Dr. Melissa Wilson's Sayres Lab at A.S.U

PASSIVE SMOKER EXPOSURE Dataset (18044) Effect of maternal tobacco smoke exposure on the placental transcriptome, Public on Sep 15, 2009, GSE18044 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE18044

ACTIVE SMOKE-RELATED Dataset (27272) Comprehensive Study of Tobacco Smoke-Related Transcriptome Alterations in Maternal and Fetal Cells, Public on Apr 01, 2011, Series GSE27272

Thank you to Dr. Bruchova for providing investigator annotation for placental sex for the samples.

Data Science Institute Data Science Fellows Template Research Compendium