Request for Term Update Review

README.md

@@ -48,9 +48,11 @@ Here are a few more detailed examples
 
 ### Batch Scripts
 
+**Simple One Node**
 Example batch file with directives that reserve one node in the default queue, with 16 cores and exclusive use of the node:
 
 <span id="example-sbatch-with-one-node-default-queue"></span>
+
 ```bash
 #!/bin/bash
 #SBATCH -N 1
@@ -60,6 +62,94 @@ Example batch file with directives that reserve one node in the default queue, w
 <<shell commands that set up and run the job>>
 ```
 
+**Modified Memory and Time**
+The job below asks for 16GB and can run up to 48 hours.
+
+<span id='example-sbatch-on-slurm-with-modified-memory-and-time'></span>
+
+```bash
+#!/bin/bash
+#SBATCH --job-name=allthesmallthings
+#SBATCH --time=48:00:00
+#SBATCH --ntasks=1
+#SBATCH --cpus-per-task=20
+#SBATCH --mem=16GB
+```
+
+**Using GPUs**
+To modify your sbatch script for a GPU, you need to add both `--gres` and `--partition`
+
+<span id='example-sbatch-script-using-slurm-with-gpu'></span>
+
+```bash
+#!/bin/bash
+#SBATCH --job-name=cron
+##SBATCH --begin=now+7days
+##SBATCH --dependency=singleton
+#SBATCH --time=00:02:00
+#SBATCH --mail-type=FAIL
+#SBATCH -p gpu
+#SBATCH -c 1
+#SBATCH --gres gpu:1
+
+# Load modules here
+ml load gromacs/2016.3
+
+# Run your script
+/bin/bash /scratch/users/pancakes/runMe.sh
+```
+
+**Long Running Jobs**
+
+Let's say you have a long running job with low memory, and the memory grows over time. Here is an example that would make sure that the job goes for 3 days. The QOS (quality of service) directive tells the job manager that the job will be running longer than a day.
+
+<span id='example-slurm-long-running-job-sbatch'></span>
+
+```bash
+#!/bin/bash
+#SBATCH --job-name=normaljob
+#SBATCH -p normal
+#SBATCH --qos=long
+#SBATCH --time=3-00:00:00
+#SBATCH --nodes=1
+#SBATCH --ntasks=1
+#SBATCH --cpus-per-task=32
+#SBATCH --mem=300000
+ml load system devel
+srun /bin/bash /scratch/users/minniemouse/myJob.sh
+```
+
+**Submit without Job File**
+You can submit a job directly (on the command line) without a job file.  The same SBATCH directives at the top become the parameter.
+
+<span id='example-submission-without-jobfile-slurm'></span>
+
+```bash
+sbatch --job-name=$job_name -o $job_name.%j.out -e $job_name.%j.err /scratch/users/smiley/scripts/makeSmiles.sh ${file1} ${file2}
+```
+
+**Google Drive Sync**
+
+<span id='example-google-drive-sync-with-sbatch-on-slurm'></span>
+
+```bash
+#!/bin/bash 
+#SBATCH --job-name=gdrive
+#SBATCH --output=/home/users/julienc/logs/gdrive.out
+#SBATCH -p agitler
+#SBATCH --time=7-0      ## To be used with --qos=long
+#SBATCH --cpus-per-task=1
+#SBATCH --begin=now+48hour
+#SBATCH --dependency=singleton
+
+module load system gdrive
+date
+
+# Example of delete, where the string at the end is the file id on Google Drive
+gdrive sync upload --keep-local --delete-extraneous $OAK/Shared/Potatoes/ sdhfshds3u39ur93rioneksfser
+```
+
+
 ## Tools
 
 <span id='question-what-tools-exist-to-help-with-using-slurm'></span> The following tools are useful for interacting or otherwise using SLURM.
@@ -78,3 +168,4 @@ Example batch file with directives that reserve one node in the default queue, w
  - [AskCI Site](https://ask.ci)
 
 
+