DrawMicromodels

This repository generates micromodel images of circles arranged on an offset grid.

The new draw_micromodels.py script extracts the logic from the original notebook and refactors it for clarity and efficiency. It demonstrates how to build the circle grid using NumPy, renders the figure without writing an image to disk, computes porosity directly from the figure canvas, and stores everything in a compressed HDF5 file using context managers.

Before running the script, install the dependencies with the setup script:

./setup.sh

Then run the program with Python 3:

python3 draw_micromodels.py