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1. controlFreq controlFreq Public

   Precise allele-specific analysis of RNA-seq at scale.

   R 2

2. fastq2allelictabs fastq2allelictabs Public

   A streamlined pipeline for converting RNA‑seq FASTQ files into allele‑specific count tables

   Python 2

3. Qllelic Qllelic Public

   Enabling differential allele-specific analysis

   R 11 2

4. ASEReadCounter_star ASEReadCounter_star Public

   Preprocessing sequencing data for allele-specific analysis

   Python 11 5