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genomics-usf-wildman/imprinted_genes

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Overview

This project contains a set of makefiles and data to return genes which are known to be imprinted in humans, and can then be used in follow-on analyses.

Data Sources

geneimprint.org

  1. http://www.geneimprint.com/site/home
  2. make geneimprint_human.txt

Catalog of Parent of Origin Effects Database

  1. [http://igc.otago.ac.nz/Search.html](Catalog of Parent of Origin Effects Database)
  2. make parent_of_origin.txt

Combined Data Files

imprinted_genes.txt -- contains a list of the imprinted genes

imprinted_genes_information.txt -- contains the information for the list of the imprinted genes

imprinted_genes_mouse.txt -- contains a list of the imprinted genes in mice

imprinted_genes_information_mouse.txt -- contains information for the list of imprinted genes in mice. (This currently doesn't exist because I don't have code to calculate this in other taxa.)

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Genes which are imprinted in humans

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