Release version 3.1.10

.github/workflows/onlabel_lintingPlus.yml

@@ -51,7 +51,7 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        # NOTE: would be nicer to not re-define them here, however env is not 
+        # NOTE: would be nicer to not re-define them here, however env is not
         #       evaluated > would need to go thour the output of a previous job
         label:
           - 'linting::check'
@@ -231,8 +231,31 @@ jobs:
     steps:
       - name: Assert that either checks passed on the label is present
         run: |
-          if [[ ${{ needs.URL_check.result }} == 'success' || ${{ needs.record_passed_label.outputs.passed }} == 'true' ]]; then
-            echo 'URL status ok';
-          else exit 1; fi
+          # First, check if the workflow was triggered by the correct label.
+          # If not, the relevant jobs were likely skipped, and we should not fail the workflow.
+          if [[ "${{ github.event.label.name }}" != "${{ env.LABEL_CHECK }}" ]]; then
+            echo "Workflow not triggered by '${{ env.LABEL_CHECK }}' label (actual label: '${{ github.event.label.name }}')."
+            echo "Skipping status assertion and exiting gracefully."
+            exit 0
+          fi
+
+          # If triggered by the correct label, proceed with the status check.
+          URL_check_RESULT="${{ needs.URL_check.result }}"
+          PASSED_LABEL_EXISTS="${{ needs.record_passed_label.outputs.passed }}"
+
+          echo "Verifying R CMD check status..."
+          echo "  - URL_check job result: ${URL_check_RESULT}"
+          echo "  - '${{ env.LABEL_SUCCESS }}' label found on PR: ${PASSED_LABEL_EXISTS}"
+
+          if [[ "${URL_check_RESULT}" == 'success' ]]; then
+            echo "=> Success: URL_check job passed."
+            exit 0
+          elif [[ "${PASSED_LABEL_EXISTS}" == 'true' ]]; then
+            echo "=> Success: Although URL_check job result was '${URL_check_RESULT}', the '${{ env.LABEL_SUCCESS }}' label already exists on the PR."
+            exit 0
+          else
+            echo "=> Failure: URL_check job result was '${URL_check_RESULT}' and the '${{ env.LABEL_SUCCESS }}' label was not found."
+            exit 1
+          fi
 
   # NOTE: Currently for the linting there is not check that passes if the label linting::passed is present

.github/workflows/onlabel_pkgdown_check.yml

@@ -158,7 +158,30 @@ jobs:
     steps:
       - name: Assert that either job passed or the label is present
         run: |
-          if [[ ${{ needs.pkgdown_build.result }} == 'success' || ${{ needs.record_passed_label.outputs.passed }} == 'true' ]]; then
-            echo 'pkgdonw status ok';
-          else exit 1; fi
+          # First, check if the workflow was triggered by the correct label.
+          # If not, the relevant jobs were likely skipped, and we should not fail the workflow.
+          if [[ "${{ github.event.label.name }}" != "${{ env.LABEL_CHECK }}" ]]; then
+            echo "Workflow not triggered by '${{ env.LABEL_CHECK }}' label (actual label: '${{ github.event.label.name }}')."
+            echo "Skipping status assertion and exiting gracefully."
+            exit 0
+          fi
+
+          # If triggered by the correct label, proceed with the status check.
+          pkgdown_build_RESULT="${{ needs.pkgdown_build.result }}"
+          PASSED_LABEL_EXISTS="${{ needs.record_passed_label.outputs.passed }}"
+
+          echo "Verifying R CMD check status..."
+          echo "  - pkgdown_build job result: ${pkgdown_build_RESULT}"
+          echo "  - '${{ env.LABEL_SUCCESS }}' label found on PR: ${PASSED_LABEL_EXISTS}"
+
+          if [[ "${pkgdown_build_RESULT}" == 'success' ]]; then
+            echo "=> Success: pkgdown_build job passed."
+            exit 0
+          elif [[ "${PASSED_LABEL_EXISTS}" == 'true' ]]; then
+            echo "=> Success: Although pkgdown_build job result was '${pkgdown_build_RESULT}', the '${{ env.LABEL_SUCCESS }}' label already exists on the PR."
+            exit 0
+          else
+            echo "=> Failure: pkgdown_build job result was '${pkgdown_build_RESULT}' and the '${{ env.LABEL_SUCCESS }}' label was not found."
+            exit 1
+          fi
 

.github/workflows/publish_version_enforce.yml

@@ -109,12 +109,12 @@ jobs:
           pkgdown::build_site_github_pages(dest_dir= "${{ env.DOC_LOC }}", new_process = FALSE, install = FALSE)
         shell: Rscript {0}
       - name: Setup Pages
-        uses: actions/configure-pages@v3
+        uses: actions/configure-pages@v5
       - name: Upload pkgdown artifact
-        uses: actions/upload-pages-artifact@v2
+        uses: actions/upload-pages-artifact@v3
         with:
           path: ${{ env.DOC_LOC }}/
-        
+
   release-version:
     # NOTE: Currently this workflow only runs if a release- branch has an open pull request
     needs:
@@ -130,7 +130,7 @@ jobs:
       contents: write
       pull-requests: write
       repository-projects: write
-      pages: write  
+      pages: write
       id-token: write
     steps:
       - uses: actions/checkout@v4
@@ -167,15 +167,15 @@ jobs:
           awk '/# abn ${{ steps.release_version.outputs.version }}*/{a=1};a;/# abn ${{ steps.release_version.outputs.previous_version }}*/{exit}' NEWS.md | head -n -1 >> body.md
       - name: Create tag and release  # 2
         run: |
-          echo $GITHUB_SHA 
+          echo $GITHUB_SHA
           gh release create ${{ steps.release_version.outputs.version }} \
             --target $GITHUB_SHA \
             --latest \
             --title "${{ steps.release_version.outputs.version }}" \
             --notes-file body.md \
             --repo ${{ env.OWNER }}/${{ env.REPO }} \
       - name: Get the built package
-        uses: actions/download-artifact@v4
+        uses: actions/download-artifact@v5
         with:
           name:
             package
@@ -187,7 +187,7 @@ jobs:
             --repo ${{ env.OWNER }}/${{ env.REPO }}
       - name: Deploy to GitHub Pages
         id: deployment
-        uses: actions/deploy-pages@v2
+        uses: actions/deploy-pages@v4
       - name: Adding the label ${{ env.LABEL_PUBLISHED }}  # 2
         run: |
           gh pr edit ${{ needs.associated_pr.outputs.event }} --add-label ${{ env.LABEL_PUBLISHED }} --repo ${{ env.OWNER }}/${{ env.REPO }}

.github/workflows/publish_version_merging.yml

@@ -104,14 +104,14 @@ jobs:
           pkgdown::build_site_github_pages(dest_dir= "${{ env.DOC_LOC }}", new_process = FALSE, install = FALSE)
         shell: Rscript {0}
       - name: Setup Pages
-        uses: actions/configure-pages@v3
+        uses: actions/configure-pages@v5
       - name: Upload pkgdown artifact
-        uses: actions/upload-pages-artifact@v2
+        uses: actions/upload-pages-artifact@v3
         with:
           path: ${{ env.DOC_LOC }}/
 
   release-version:
-    needs: 
+    needs:
       - associated_pr
       - build-release-content
       - build-pkgdown-content
@@ -124,7 +124,7 @@ jobs:
       contents: write
       pull-requests: write
       repository-projects: write
-      pages: write  
+      pages: write
       id-token: write
     steps:
       - uses: actions/checkout@v4
@@ -161,7 +161,7 @@ jobs:
             --notes-file body.md \
             --repo ${{ env.OWNER }}/${{ env.REPO }}
       - name: Get the built package
-        uses: actions/download-artifact@v4
+        uses: actions/download-artifact@v5
         with:
           name:
             package
@@ -173,7 +173,7 @@ jobs:
             --repo ${{ env.OWNER }}/${{ env.REPO }}
       - name: Deploy to GitHub Pages
         id: deployment
-        uses: actions/deploy-pages@v2
+        uses: actions/deploy-pages@v4
       - name: Adding the label ${{ env.LABEL_PUBLISHED }}
         run: |
           gh pr edit ${{ needs.associated_pr.outputs.event }} --add-label ${{ env.LABEL_PUBLISHED }} --repo ${{ env.OWNER }}/${{ env.REPO }}

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: abn
 Title: Modelling Multivariate Data with Additive Bayesian Networks
-Version: 3.1.9
-Date: 2025-06-26
+Version: 3.1.10
+Date: 2025-08-07
 Authors@R: c(
     person("Matteo", "Delucchi", , "matteo.delucchi@math.uzh.ch", role = c("aut", "cre"),
            comment = c(ORCID = "0000-0002-9327-1496")),

NEWS.md

@@ -1,4 +1,10 @@
 
+# abn 3.1.10
+[diff](https://github.com/furrer-lab/abn/compare/3.1.3...3.1.10)
+
+> 2025-08-07
+
+
 # abn 3.1.9
 [diff](https://github.com/furrer-lab/abn/compare/3.1.3...3.1.9)
 

README.md

@@ -5,7 +5,7 @@
 <!-- WARNING: -->
 <!-- The ?branch=release-x.y.y is updated automatically by the initiate_version_release workflow -->
 [![status](https://joss.theoj.org/papers/1bbc43a2be86f5d3f831cedb5cf81812/status.svg)](https://joss.theoj.org/papers/10.21105/joss.06822)
-[![On Label CRAN Checks](https://github.com/furrer-lab/abn/actions/workflows/onlabel_CRAN_checks.yml/badge.svg?branch=release-3.1.9)](https://github.com/furrer-lab/abn/actions/workflows/onlabel_CRAN_checks.yml)
+[![On Label CRAN Checks](https://github.com/furrer-lab/abn/actions/workflows/onlabel_CRAN_checks.yml/badge.svg?branch=release-3.1.10)](https://github.com/furrer-lab/abn/actions/workflows/onlabel_CRAN_checks.yml)
 [![Codecov](https://img.shields.io/codecov/c/github/furrer-lab/abn)](https://app.codecov.io/gh/furrer-lab/abn)
 [![GitHub R package version](https://img.shields.io/github/r-package/v/furrer-lab/abn)](https://github.com/furrer-lab/abn/tags)
 ![cran](https://www.r-pkg.org/badges/version-ago/abn) 

configure

@@ -1,6 +1,6 @@
 #! /bin/sh
 # Guess values for system-dependent variables and create Makefiles.
-# Generated by GNU Autoconf 2.71 for abn 3.1.9.
+# Generated by GNU Autoconf 2.71 for abn 3.1.10.
 #
 #
 # Copyright (C) 1992-1996, 1998-2017, 2020-2021 Free Software Foundation,
@@ -607,8 +607,8 @@ MAKEFLAGS=
 # Identity of this package.
 PACKAGE_NAME='abn'
 PACKAGE_TARNAME='abn'
-PACKAGE_VERSION='3.1.9'
-PACKAGE_STRING='abn 3.1.9'
+PACKAGE_VERSION='3.1.10'
+PACKAGE_STRING='abn 3.1.10'
 PACKAGE_BUGREPORT=''
 PACKAGE_URL=''
 
@@ -1212,7 +1212,7 @@ if test "$ac_init_help" = "long"; then
   # Omit some internal or obsolete options to make the list less imposing.
   # This message is too long to be a string in the A/UX 3.1 sh.
   cat <<_ACEOF
-\`configure' configures abn 3.1.9 to adapt to many kinds of systems.
+\`configure' configures abn 3.1.10 to adapt to many kinds of systems.
 
 Usage: $0 [OPTION]... [VAR=VALUE]...
 
@@ -1274,7 +1274,7 @@ fi
 
 if test -n "$ac_init_help"; then
   case $ac_init_help in
-     short | recursive ) echo "Configuration of abn 3.1.9:";;
+     short | recursive ) echo "Configuration of abn 3.1.10:";;
    esac
   cat <<\_ACEOF
 
@@ -1342,7 +1342,7 @@ fi
 test -n "$ac_init_help" && exit $ac_status
 if $ac_init_version; then
   cat <<\_ACEOF
-abn configure 3.1.9
+abn configure 3.1.10
 generated by GNU Autoconf 2.71
 
 Copyright (C) 2021 Free Software Foundation, Inc.
@@ -1379,7 +1379,7 @@ cat >config.log <<_ACEOF
 This file contains any messages produced by compilers while
 running configure, to aid debugging if configure makes a mistake.
 
-It was created by abn $as_me 3.1.9, which was
+It was created by abn $as_me 3.1.10, which was
 generated by GNU Autoconf 2.71.  Invocation command line was
 
   $ $0$ac_configure_args_raw
@@ -2368,7 +2368,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
 # report actual input values of CONFIG_FILES etc. instead of their
 # values after options handling.
 ac_log="
-This file was extended by abn $as_me 3.1.9, which was
+This file was extended by abn $as_me 3.1.10, which was
 generated by GNU Autoconf 2.71.  Invocation command line was
 
   CONFIG_FILES    = $CONFIG_FILES
@@ -2423,7 +2423,7 @@ ac_cs_config_escaped=`printf "%s\n" "$ac_cs_config" | sed "s/^ //; s/'/'\\\\\\\\
 cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
 ac_cs_config='$ac_cs_config_escaped'
 ac_cs_version="\\
-abn config.status 3.1.9
+abn config.status 3.1.10
 configured by $0, generated by GNU Autoconf 2.71,
   with options \\"\$ac_cs_config\\"
 

configure.ac

@@ -1,4 +1,4 @@
-AC_INIT([abn],[3.1.9])
+AC_INIT([abn],[3.1.10])
 
 ## Use gsl-config to find arguments for compiler and linker flags
 ##