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31 changes: 30 additions & 1 deletion test/test_to_ngff_zarr_tensorstore.py
Original file line number Diff line number Diff line change
Expand Up @@ -3,8 +3,16 @@

import pytest
import zarr
from dask_image import imread

from ngff_zarr import Methods, to_multiscales, to_ngff_zarr, from_ngff_zarr
from ngff_zarr import (
Methods,
to_multiscales,
to_ngff_zarr,
from_ngff_zarr,
config,
to_ngff_image,
)

from ._data import verify_against_baseline

Expand Down Expand Up @@ -47,3 +55,24 @@ def test_gaussian_isotropic_scale_factors(input_images):
to_ngff_zarr(tmpdir, multiscales, use_tensorstore=True)
multiscales = from_ngff_zarr(tmpdir)
verify_against_baseline(dataset_name, baseline_name, multiscales)


def test_large_image_serialization(input_images):
pytest.importorskip("tensorstore")

default_mem_target = config.memory_target
config.memory_target = int(1e6)

dataset_name = "lung_series"
data = imread.imread(input_images[dataset_name])
image = to_ngff_image(
data=data,
dims=("z", "y", "x"),
scale={"z": 2.5, "y": 1.40625, "x": 1.40625},
translation={"z": 332.5, "y": 360.0, "x": 0.0},
name="LIDC2",
)
multiscales = to_multiscales(image)
with tempfile.TemporaryDirectory() as tmpdir:
to_ngff_zarr(tmpdir, multiscales, use_tensorstore=True)
config.memory_target = default_mem_target
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