Scripts used for the publication:
- Exploring the role of polymorphic interspecies structural variants in reproductive isolation and adaptive divergence in Eucalyptus
- https://doi.org/10.1093/gigascience/giae029
bwa mem
samtools
bcftools
bioawk
plink1.9
pcangsd
GNU parallel
WhatsHap
ShapeIT
EDTA
RepeatMasker
BRAKER2
Juicer
3D-DNA
mummer
SyRI
Paragraph
R
- tidyverse
- ggplot2
Python3
- pandas
- seaborn
- matplotlib
- scipy
- statsmodels