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@fastomop

FastOMOP

LLM-enabled Real World Evidence and Real Time Intelligence using OMOP Common Data Model

Welcome to FastOMOP

Observational Medical Outcomes Partnership Common Data Model

The OMOP Common Data Model (CDM) is a standardized data model designed to organize healthcare data into a common structure. It enables systematic analysis across disparate observational databases and facilitates collaborative research in the healthcare domain.

Model Context Protocol

The Model Context Protocol (MCP) is a framework that enables structured interaction between Large Language Models (LLMs) and databases. OMCP combines this protocol with the OMOP data model to create a powerful system for healthcare data analysis.

What is OMCP?

OMCP (OMOP Model Context Protocol) is an open-source server that enables Large Language Models (LLMs) to interact with healthcare databases that follow the OMOP Common Data Model. It provides a structured way for AI systems to:

  • Query healthcare data with appropriate security and privacy controls
  • Perform cohort discovery and selection
  • Generate statistical analyses and insights from clinical data
  • Maintain data lineage and provenance tracking
  • Access standardized healthcare terminologies and concept mappings

Use Cases

  • Clinical research and cohort discovery
  • Population health analytics
  • Healthcare quality measurement
  • Drug safety surveillance
  • Clinical decision support
  • Medical knowledge extraction

Architecture

Our first project, OMCP, is a Model Context Protocol server that sits between LLMs and OMOP CDM databases, providing a structured, secure interface for AI models to query and analyze healthcare data without direct database access.

+-------+     +--------------+     +----------------+
|  LLM  | <-> | OMCP Server  | <-> | OMOP Database  |
+-------+     +--------------+     +----------------+
             /                \
   Natural Language      Structured Queries
     Requests            & Data Validation

Popular repositories Loading

  1. omcp omcp Public

    Model Context Protocol Server for the Observational Medical Outcomes Partnership (OMOP) Common Data Model

    Python 11 4

  2. .github .github Public

  3. omcp_r omcp_r Public

    Python 1

  4. omcp_a2a omcp_a2a Public

    current A2A-omcp implementation

    Python

  5. omcp_py omcp_py Public

    Python sandbox. An MCP server that allows agents to execute Python code in a secure, sandboxed environment.

    Python

  6. omcp_kge omcp_kge Public

    Knowledge Graph with Embeddings of Biomedical Ontologies for OMOP MCP servers and A2A workflows

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Showing 10 of 13 repositories

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