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v1.1.0 - minor improvements
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@sreichl sreichl released this 28 May 15:35
· 1 commit to main since this release
v1.1.0
8c192fe

Features

  • Exon-based gene annotation without BioMart using Biostars gene-annotation script (https://www.biostars.org/p/91218)
  • STAR aligner defaults set to ENCODE recommendations in config
  • Sample-annotation sanitization for R compatibility

Documentation

  • QC guideline enhancements in README (updated thresholds & descriptions)

Comprehensive testing

  • Sequencing modes: single-end & paired-end
  • Species: mouse & human
  • Sample sources: primary tissues & cell lines
  • Library protocols: Smart-seq2 (unstranded), NEBNext Ultra (unstranded), Quant-seq (stranded)
  • Cell types: Structural (epithelial, fibroblast, endothelial), Hematopoietic (13 cell types), CAR-T cells, sorted primary immune subsets, neurons

Full Changelog: v1.0.0...v1.1.0

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