Atlas analysis

A collection of scripts used in Atlas analysis pipelines, such as in GXA bulk-recalculations.

Name		Name	Last commit message	Last commit date
Latest commit History 759 Commits
.github/workflows		.github/workflows
arrays		arrays
atlasExperimentInR		atlasExperimentInR
deconvolution		deconvolution
differential		differential
gsa		gsa
norm		norm
qc		qc
tests		tests
README.md		README.md
VERSION		VERSION
calculate_percentile_ranks.R		calculate_percentile_ranks.R
calculate_percentile_ranks_for_exp.pl		calculate_percentile_ranks_for_exp.pl
calculate_percentile_ranks_for_exp.sh		calculate_percentile_ranks_for_exp.sh
compare_gtfs.R		compare_gtfs.R
correlate.R		correlate.R
generateBaselineHeatmap.R		generateBaselineHeatmap.R
generateFactorsConfig.pl		generateFactorsConfig.pl
generate_baseline_heatmap.sh		generate_baseline_heatmap.sh
gxa_generateConfigurationForExperiment.pl		gxa_generateConfigurationForExperiment.pl
kcluster_parallel.R		kcluster_parallel.R
merge_by_gene_id.R		merge_by_gene_id.R
run_coexpression_for_experiment.R		run_coexpression_for_experiment.R
run_coexpression_for_experiment.sh		run_coexpression_for_experiment.sh
run_tests_with_containers.sh		run_tests_with_containers.sh
transcripts_expr_values_check.R		transcripts_expr_values_check.R

Provide feedback