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The betadiv package

R-CMD-check License: LGPL v3

The betadiv package is licensed under the GNU Lesser General Public License v3.0 (LGPL-3).

The betadiv package implements the multiple-site dissimilarity indices of Simpson, Sorensen and nestedness, which can be used to assess the beta diversity of a population. These indices were adapted from those developed by Baselga (2010, Global Ecology and Biogeography 19:134--143) in order to make them population size-independent. All the details behind the calculation and estimation of these adapted indices can be found in Fortin et al. (2020, Global Ecology and Biogeography 29: 1073-1084).

The betadiv package depends on the J4R package. The dissimilarity indices are estimated using three Java libraries: betadivcalc, repicea, and repicea-mathstats. All are licensed under the Lesser GNU General Public License v3.0 (LGPL-3). This package and the associated Java libraries come with absolutely NO WARRANTY.

The source code of the betadiv package is freely available at https://github.com/CWFC-CCFB/betadiv .

The documentation can be found at https://github.com/CWFC-CCFB/betadiv/wiki/The-betadiv-package-for-R .

Tickets can be created at https://github.com/CWFC-CCFB/betadiv/issues .

Mathieu Fortin e-mail: mathieu.fortin.re@gmail.com

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An R package to estimate beta diversity

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